amep.evaluate

Trajectory Analysis

The AMEP module amep.evaluate contains the main analysis classes for analyzing whole trajectories, performing time averages, and calculating observables from simulation data of particle-based and continuum simulations.

Classes

ClusterGrowth(traj[, skip, nav, min_size, ...])	Growth of clusters over time.
ClusterSizeDist(traj[, skip, nav, ...])	Clustersize distribution.
EkinRot(traj, inertia[, mode, skip, nav, ...])	Rotational kinetic energy.
EkinTot(traj, mass, inertia[, skip, nav])	Total kinetic energy.
EkinTrans(traj, mass[, mode, skip, nav])	Translational kinetic energy.
Function(traj, func[, skip, nav])	Apply a user-defined function to a trajectory.
HexOrderCor(traj[, skip, nav, ptype, other])	Spatial correlation function of the hexagonal order parameter.
LDdist(traj[, skip, nav, nbins, xmin, xmax, ...])	Local density distribution.
MSD(traj[, ptype, skip, nav, use_nojump, pbc])	Mean-square displacement.
OACF(traj[, ptype, skip, nav, direction])	Orientational autocorrelation function.
PCF2d(traj[, skip, nav, ptype, other])	2d pair correlation function.
PCFangle(traj[, skip, nav, ptype, other])	2d angular pair correlation function.
PosOrderCor(traj[, grtdata, sxydata, skip, ...])	Positional order correlation function.
Psi6dist(traj[, skip, nav, nbins, ptype, other])	Distribution of the hexagonal order parameter.
RDF(traj[, skip, nav, ptype, other])	Radial pair distribution function.
SF2d(traj[, skip, nav, ptype, other, ...])	2d static structure factor.
SFiso(traj[, skip, nav, qmax, twod, njobs, ...])	Isotropic static structure factor.
SpatialVelCor(traj[, skip, nav, ptype, other])	Spatial velocity correlation function.
TimeCor(traj, *args[, ptype, skip, nav])	Calculate the autocorrelation function in time of a user-defined quantity.
VACF(traj[, ptype, skip, nav, direction])	Velocity autocorrelation function.
VelDist(traj[, skip, nav, nbins, ptype, ...])	Velocity distribution.