amep.base.BaseReader#

class amep.base.BaseReader(savedir: str, start: float, stop: float, nth: int, filename: str)#

Bases: object

Base class to read simulation data from output files and to convert it into the hdf5 file format.

__init__(savedir: str, start: float, stop: float, nth: int, filename: str) → None#

Initializes a BaseReader object.

Parameters:

savedir (str) – Directory in which the .h5amep file is created.
start (int) – Start reading the trajectory data from this fraction of the trajectory.
stop (int) – Stop reading the trajectory data from this fraction of the trajectory.
nth (int) – Read each nth frame.
filename (str) – Name of the trajectory file that is created. Needs to be an .h5amep file.

Return type:

None

Methods

__init__(savedir, start, stop, nth, filename)

Initializes a BaseReader object.

Attributes

`d`
`dt`
`filename`	The path to the HDF5-file that contains the writers data.
`nth`
`savedir`
`start`
`steps`	The array of simulation steps for each saved frame.
`stop`
`times`	The array of physical times for each saved frame.

property filename: Path#: The path to the HDF5-file that contains the writers data.

property steps: ndarray#

The array of simulation steps for each saved frame.

The simulation steps are also used to index the frame data in the HDF5-File.