amep.reader

Reading Simulation Data

The AMEP module amep.reader as an internal module that provides different reader classes for reading simulation data created with various simulation software. This module is part of the backend of AMEP.

Classes

ContinuumReader(directory, savedir[, start, ...])	A reader for continuum data
GROMACSReader(directory, savedir[, start, ...])	Reads GROMACS files and writes the containing data to an hdf5 file.
H5amepReader(directory[, trajfile])	Reads simulation data from an HDF5 trajectory file.
HOOMDReader(directory, savedir[, start, ...])	Reads hoomd-blue GSD files and writes the containing data to an hdf5 file.
LammpsReader(directory, savedir[, start, ...])	Reads LAMMPS simulation data and writes it to an hdf5 file.

Exceptions

FileError

An error raised when wrong files are fed into a reader.